writeGFF3

writeGFF2

writeGFF3-methods

writeGFF2-methods

writeGFF3,SitePairSet-method

writeGFF2,SitePairSet-method

writeGFF3,SitePairSetList-method

writeGFF2,SitePairSetList-method

writeGFF3,SiteSet-method

writeGFF2,SiteSet-method

writeGFF3,SiteSetList-method

writeGFF2,SiteSetList-method


    A <code>SiteSet</code>, <code>SitePairSet</code>, <code>SiteSetList</code>,
    or <code>SitePairSetList</code> object.
  


    The score column can have absolute value or relative value.
  

scoreType


  write the <code>SiteSet</code>, <code>SitePairSet</code>, <code>SiteSetList</code>,
  <code>SitePairSetList</code> into the GFF3 or GFF2 format.


methods

TFBSTools is a package for the analysis and manipulation of
transcription factor binding sites. It includes matrices conversion
between Position Frequency Matirx (PFM),
Position Weight Matirx (PWM) and Information Content Matrix (ICM).
It can also scan putative TFBS from sequence/alignment,
query JASPAR database and provides a wrapper of
de novo motif discovery software.

Ge Tan

TFBSTools

Software Package for Transcription Factor Binding Site (TFBS) Analysis

writeGFF3-methods function

A <code>SiteSet</code>, <code>SitePairSet</code>, <code>SiteSetList</code>,
    or <code>SitePairSetList</code> object.

The score column can have absolute value or relative value.

write the <code>SiteSet</code>, <code>SitePairSet</code>, <code>SiteSetList</code>,
  <code>SitePairSetList</code> into the GFF3 or GFF2 format.

writeGFF3-methods: `writeGFF3`, `writeGFF2` functions

Description

Usage

Arguments

Value