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TFMPvalue (version 1.0.0)

Efficient and Accurate P-Value Computation for Position Weight Matrices

Description

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. .

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Install

install.packages('TFMPvalue')

Monthly Downloads

2,330

Version

1.0.0

License

GPL-2

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Maintainer

Ge Tan

Last Published

January 19th, 2026

Functions in TFMPvalue (1.0.0)

TFMPvalue-package

Efficient and accurate P-value computation for Position Weight Matrices
TFMLazyScore

Compute the score from P-value.
TFMsc2pv

Compute P-value from score.
TFMpv2sc

Compute score from P-value.