calculateEvalue

This function calculates E-value based on .

R implementation of 'TFactS' to predict which are the
transcription factors (TFs), regulated in a biological condition based on
lists of differentially expressed genes (DEGs) obtained from transcriptome
experiments. This package is based on the 'TFactS' concept by
Essaghir et al. (2010) <doi:10.1093/nar/gkq149> and expands
it. It allows users to perform 'TFactS'-like enrichment approach. The
package can import and use the original catalogue file from the 'TFactS'
as well as users' defined catalogues of interest that are not supported
by 'TFactS' (e.g., Arabidopsis).

Atsushi Fukushima

TFactSR

Enrichment Approach to Predict Which Transcription Factors are
Regulated

calculateEvalue function

<dl><dt>df</dt>
<dd>a data frame containng p-values</dd>
<dt>TFs</dt>
<dd>a character vector of transcription factor</dd></dl>

Arguments

Author

calculates E-value — calculateEvalue

<dl>

<dt>df</dt>
<dd>a data frame containng p-values</dd>


<dt>TFs</dt>
<dd>a character vector of transcription factor</dd>

</dl>

calculateEvalue: calculates E-value

Description

Usage

Value

Arguments

Author

References

Examples