calculateFDRBH

This function calculates FDR based on BH.

R implementation of 'TFactS' to predict which are the
transcription factors (TFs), regulated in a biological condition based on
lists of differentially expressed genes (DEGs) obtained from transcriptome
experiments. This package is based on the 'TFactS' concept by
Essaghir et al. (2010) <doi:10.1093/nar/gkq149> and expands
it. It allows users to perform 'TFactS'-like enrichment approach. The
package can import and use the original catalogue file from the 'TFactS'
as well as users' defined catalogues of interest that are not supported
by 'TFactS' (e.g., Arabidopsis).

Atsushi Fukushima

TFactSR

Enrichment Approach to Predict Which Transcription Factors are
Regulated

calculateFDRBH function

<dl><dt>df</dt>
<dd>a data frame containng p-values</dd></dl>

Arguments

Author

calculates FDR by Benjamini and Hochberg method — calculateFDRBH

<dl>

<dt>df</dt>
<dd>a data frame containng p-values</dd>

</dl>

calculateFDRBH: calculates FDR by Benjamini and Hochberg method

Description

Usage

Value

Arguments

Author

References

Examples