calculateQvalue

This function calculates Q-value based on Storey.

R implementation of 'TFactS' to predict which are the
transcription factors (TFs), regulated in a biological condition based on
lists of differentially expressed genes (DEGs) obtained from transcriptome
experiments. This package is based on the 'TFactS' concept by
Essaghir et al. (2010) <doi:10.1093/nar/gkq149> and expands
it. It allows users to perform 'TFactS'-like enrichment approach. The
package can import and use the original catalogue file from the 'TFactS'
as well as users' defined catalogues of interest that are not supported
by 'TFactS' (e.g., Arabidopsis).

Atsushi Fukushima

TFactSR

Enrichment Approach to Predict Which Transcription Factors are
Regulated

calculateQvalue function

<dl><dt>df</dt>
<dd>a data frame containng p-values</dd>
<dt>lambda</dt>
<dd>a vector of the lambda values utilized to obtain pi0.lambda</dd></dl>

Arguments

Author

calculates Q-value — calculateQvalue

<dl>

<dt>df</dt>
<dd>a data frame containng p-values</dd>


<dt>lambda</dt>
<dd>a vector of the lambda values utilized to obtain pi0.lambda</dd>

</dl>

calculateQvalue: calculates Q-value

Description

Usage

Value

Arguments

Author

References

Examples