formatET

This function formats the result of enrichment test (ET)
based on Fisher's exact test

R implementation of 'TFactS' to predict which are the
transcription factors (TFs), regulated in a biological condition based on
lists of differentially expressed genes (DEGs) obtained from transcriptome
experiments. This package is based on the 'TFactS' concept by
Essaghir et al. (2010) <doi:10.1093/nar/gkq149> and expands
it. It allows users to perform 'TFactS'-like enrichment approach. The
package can import and use the original catalogue file from the 'TFactS'
as well as users' defined catalogues of interest that are not supported
by 'TFactS' (e.g., Arabidopsis).

Atsushi Fukushima

TFactSR

Enrichment Approach to Predict Which Transcription Factors are
Regulated

formatET function

<dl><dt>list</dt>
<dd>a list of the result of enrichment test (ncol = 6)</dd></dl>

Arguments

Author

formats the result of enrichment test (ET) — formatET

<dl>

<dt>list</dt>
<dd>a list of the result of enrichment test (ncol = 6)</dd>

</dl>

formatET: formats the result of enrichment test (ET)

Description

Usage

Value

Arguments

Author

Examples