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TGST

This is a package for targeted gold standard testing.

See reference:

Optimal Allocation of Gold Standard Testing under Constrained Availability: Application to Assessment of HIV Treatment Failure.

(Tao Liu, Ph.D., Joseph W. Hogan, Sc.D., Lisa Wang, Sc.M., Shangxuan Zhang, M.S., and Rami Kantor, M.D.)

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Version

Install

install.packages('TGST')

Monthly Downloads

171

Version

1.0

License

GPL-3

Maintainer

Yizhen Xu

Last Published

November 23rd, 2020

Functions in TGST (1.0)

semipar.fnr.fpr

Semiparametric FNR FPR of the rules
TGST-class

Constructor of TGST class
Simdata

Simulated data for package illustration
summary

summary function.
nonpar.rules

Nonparametric Rules Set
plot

plot function.
TGST

Create a TGST Object
TGST.summ

Summary of Disease Status and Risk Score
cal.AUC

Calculate AUC
nonpar.fnr.fpr

Nonparametric FNR FPR of the rules
Opt.semipar.rule

Optimal Semiparametric Rule
ROC.nonpar

Nonparametric ROC Analysis
OptimalRule

Optimal Tripartite Rule
ROCAnalysis

ROC Analysis
Check.exp.tilt

Check exponential tilt model assumption
Opt.nonpar.rule

Optimal Nonparametric Rule
ROC.semipar

Semiparametric ROC Analysis
Output-class

Constructor of Output class
Semi.par.rule

Min TMR Semiparametric Rule
CV.TGST

Cross Validation