specopt-class

specopt

Class "specopt" stores options for fitting and plotting spectral
models in particular; this is a subclass of class <code>opt</code>.

classes

A problem solving environment (PSE) for fitting separable
nonlinear models to measurements arising in physics and chemistry
experiments, as described by Mullen & van Stokkum (2007)
<doi:10.18637/jss.v018.i03> for its use in fitting time resolved
spectroscopy data, and as described by Laptenok et al. (2007)
<doi:10.18637/jss.v018.i08> for its use in fitting Fluorescence
Lifetime Imaging Microscopy (FLIM) data, in the study of Förster
Resonance Energy Transfer (FRET). `TIMP` also serves as the
computation backend for the `GloTarAn` software, a graphical user
interface for the package, as described in Snellenburg et al. (2012)
<doi:10.18637/jss.v049.i03>.

Joris J Snellenburg

TIMP

Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy

Katharine M. Mullen

Joris Snellenburg

Sergey P. Laptenok

David Nicolaides

Ivo H.M. van Stokkum

specopt-class function

Objects can be created by calls of the form <code>new("specopt", ...)</code>.
or <code>specopt(...)</code>

Objects from the Class

<dl>
 <dt><code>nospectra</code>:</dt>
<dd>Object of class <code>"logical"</code> 
 that defaults
 to <code>FALSE</code>; if <code>TRUE</code>, do not plot time-resolved spectra</dd> <dt><code>selectedspectra</code>:</dt>
<dd>Object of class <code>"vector"</code> 
 containing
 <code>x</code> indices for which plots of 
 time-resolved spectra are desired under a spectral model</dd> 
</dl>

Slots

Katharine M. Mullen, Ivo H. M. van Stokkum

Author

Class "specopt" stores options for fitting and plotting spectral models — specopt-class

<dl>
 <dt><code>nospectra</code>:</dt>
<dd>Object of class <code>"logical"</code> 
 that defaults
 to <code>FALSE</code>; if <code>TRUE</code>, do not plot time-resolved spectra</dd>

 <dt><code>selectedspectra</code>:</dt>
<dd>Object of class <code>"vector"</code> 
 containing
 <code>x</code> indices for which plots of 
 time-resolved spectra are desired under a spectral model</dd>

 
</dl>

specopt-class: Class "specopt" stores options for fitting and plotting spectral models

Description

Arguments

Objects from the Class

Slots

Author

Details

See Also