TestSet_C

Tests a user-specified subset in a CTP, using a user-supplied local test

Methods for computing joint tests, controlling the Familywise Error Rate (FWER) and getting lower bounds on the number of false hypotheses in a set. The methods implemented here are described in Mogensen and Markussen (2021) <arXiv:2108.04731>.

Phillip Mogensen

TMTI

'Too Many, Too Improbable' (TMTI) Test Procedures

TestSet_C function

<dl><dt>LocalTest</dt>
<dd>A function that returns a double in (0, 1).</dd>
<dt>pSub</dt>
<dd>A vector with the p-values of the set to be tested.</dd>
<dt>pRest</dt>
<dd>A vector containing the remaining p-values.</dd>
<dt>alpha</dt>
<dd>Double indicating the significance level.</dd>
<dt>is_subset_sequence</dt>
<dd>Logical indicating whether the supplied subset of
p_values corresponds to the pSub.size() smallest overall p-values.</dd>
<dt>EarlyStop</dt>
<dd>Logical indicating whether to exit as soon as a non-significant
p-value is found.</dd>
<dt>verbose</dt>
<dd>Logical indicating whether to print progress.</dd></dl>

Arguments

Leading NA — TestSet_C

<dl>

<dt>LocalTest</dt>
<dd>A function that returns a double in (0, 1).</dd>


<dt>pSub</dt>
<dd>A vector with the p-values of the set to be tested.</dd>


<dt>pRest</dt>
<dd>A vector containing the remaining p-values.</dd>


<dt>alpha</dt>
<dd>Double indicating the significance level.</dd>


<dt>is_subset_sequence</dt>
<dd>Logical indicating whether the supplied subset of
p_values corresponds to the pSub.size() smallest overall p-values.</dd>


<dt>EarlyStop</dt>
<dd>Logical indicating whether to exit as soon as a non-significant
p-value is found.</dd>


<dt>verbose</dt>
<dd>Logical indicating whether to print progress.</dd>

</dl>

TestSet_C: Leading NA

Description

Usage

Arguments