TPAC (version 0.3.0)

Tissue-Adjusted Pathway Analysis of Cancer (TPAC)

Description

Contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" .

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Version

Install

install.packages('TPAC')

Monthly Downloads

183

Version

0.3.0

License

GPL (>= 2)

Maintainer

H Robert Frost

Last Published

July 23rd, 2025

Functions in TPAC (0.3.0)

tpacForCollection

TPAC method for multiple gene sets

getSupportedCancerTypes

Get supported cancer types

TPAC-package

Tissue-adjusted pathway analysis of cancer (TPAC)

tpacForCancer

Executes the TPAC method on cancer gene expression data

createGeneSetCollection

Utility function to help create gene set collection list object

tpac

Tissue-adjusted pathway analysis of cancer (TPAC) algorithm