TPACData (version 0.1.0)

Human Protein Atlas Data for Tissue-Adjusted Pathway Analysis of Cancer (TPAC)

Description

Contains summary data on gene expression in normal human tissues from the Human Protein Atlas for use with the Tissue-Adjusted Pathway Analysis of cancer (TPAC) method. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" .

Copy Link

Version

Install

install.packages('TPACData')

Monthly Downloads

240

Version

0.1.0

License

GPL (>= 2)

Maintainer

H Robert Frost

Last Published

October 24th, 2023

Functions in TPACData (0.1.0)

hpa.data

Gene expression data for normal human tissues from the Human Protein Atlas (HPA). This data was specially processed by the HPA group as FPKM values (file "HPA.normal.FPKM.GDCpipeline.csv") using a pipeline similar to that employed by GDC for the TCGA RNA-seq data.