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TR8 (version 0.9.23)

A Tool for Downloading Functional Traits Data for Plant Species

Description

Plant ecologists often need to collect "traits" data about plant species which are often scattered among various databases: TR8 contains a set of tools which take care of automatically retrieving some of those functional traits data for plant species from publicly available databases (The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg values for Italian Flora, Mycorrhizal intensity databases, BROT, PLANTS, Jepson Flora Project). The TR8 name, inspired by "car plates" jokes, was chosen since it both reminds of the main object of the package and is extremely short to type.

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Version

Install

install.packages('TR8')

Monthly Downloads

334

Version

0.9.23

License

GPL (>= 2)

Issues

Pull Requests

Stars

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Maintainer

Gionata Bocci

Last Published

September 22nd, 2024

Functions in TR8 (0.9.23)

available_traits

available_traits shows which traits are available for download
pignatti

pignatti
biolflor_lookup

biolflor_lookup
tr8_config

tr8_config a GUI to configure TR8 package.
leda_lookup

List with reference variables needed to download traits from LEDA Traitbase
traits_special_Biolflor

traits_special_Biolflor
list_of_traits_Biolflor

list_of_traits_Biolflor
tr8_setup

A function to download the most recent url-tables for some traitbases.
Tr8-class

Class "Tr8"
leda_download_to_local_directory

A utility to download a local copy of the LEDA data files.
column_list

column_list
ECOFLORA_df

ECOFLORA_df: local lookup table for Ecoflora species' url(s)
available_tr8

A dataframe containing the traits available for download.
local_storage

A utility to storage a local copy of traits data
TR8-package

TR8: a tool for retrieving functional traits data for plant species.
leda_fc

leda_fc
imkerbond_check

Set of plant species names to be corrected.
traits_pollen_Biolflor

traits_pollen_Biolflor
traits_eco

Set of functional traits to be retrieved by Ecoflora.
tr8

tr8: a function for retrieving functional traits data from various databases.
ref_PLANTS

ref_PLANTS