demo.samples

A samples database, for demonstrating the <code>TRAMPR</code> package.
  This is a subset of a full samples database, is not intended to
  represent any real data set, and should not be assumed to be
  accurate.

  The data are stored as a <code><a href="/link/TRAMPsamples?package=TRAMPR&version=1.0-7" rd-options="" data-mini-rdoc="TRAMPR::TRAMPsamples">TRAMPsamples</a></code> object.  Columns in
  the <code>info</code> and <code>data</code> components are described on the
  <code><a href="/link/TRAMPsamples?package=TRAMPR&version=1.0-7" rd-options="" data-mini-rdoc="TRAMPR::TRAMPsamples">TRAMPsamples</a></code> page, but with some additions:
  <ul><li><code>info</code>:<ul><li><code>soilcore.fk</code>: Key to the soil core from which a
      sample came.  See<code>soilcore</code>, below.</li></ul></li><li><code>data</code>:<ul><li><code>sample.file.name</code>: Original<code>.fsa</code>file
      corresponding to the TRFLP run.  This is included in all<code>TRAMPsamples</code>objects created by<code><a href="/link/load.abi?package=TRAMPR&version=1.0-7" rd-options="" data-mini-rdoc="TRAMPR::load.abi">load.abi</a></code>.</li></ul></li><li><code>soilcore</code>: A<code>data.frame</code>with information about
    the soilcore from which samples came.<ul><li><code>soilcore.pk</code>: Key, distinguishing soil cores.</li><li><code>plot</code>: Plot number (1 to 10).</li><li><code>elevation</code>: Height above mean sea level, in metres.</li><li><code>east</code>: Easting (New Zealand Map Grid/NZMG).</li><li><code>north</code>: Northing (NZMG).</li><li><code>vegetation</code>: Vegetation type (<code>Nothofagus
	solandri</code>or<code>Pinus contorta</code>).</li></ul></li></ul>

datasets

TRAMPR is an R package for matching terminal restriction
        fragment length polymorphism (TRFLP) profiles between unknown
        samples and a database of knowns.  TRAMPR facilitates analysis
        of many unknown profiles at once, and provides tools for
        working directly with electrophoresis output through to
        generating summaries suitable for community analyses with R's
        rich set of statistical functions.  TRAMPR also resolves the
        issues of multiple TRFLP profiles within a species, and shared
        TRFLP profiles across species.

Rich FitzJohn

TRAMPR

TRFLP Analysis and Matching Package for R

demo.samples function

A <code><a href="/link/TRAMPsamples?package=TRAMPR&version=1.0-7" rd-options="" data-mini-rdoc="TRAMPR::TRAMPsamples">TRAMPsamples</a></code> object.

format

This data set is provided under a Creative Commons
  <dquote>Attribution-NonCommercial-NoDerivs 2.5</dquote> licence.  Please see
  <url>http://creativecommons.org/licenses/by-nc-nd/2.5/</url> for details.

demo.samples: Demonstration Samples Database

Description

Usage

Arguments

format

Licence