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TROM (version 1.0)

Transcriptome Overlap Measure

Description

A new bioinformatic tool for comparing transcriptomes of two biological samples from the same or different species. The mapping is conducted based on the overlap of the associated genes of different samples.

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Version

Install

install.packages('TROM')

Monthly Downloads

Version

1.0

License

GPL-2

Maintainer

Jingyi Jessica Li

Last Published

April 8th, 2015

Functions in TROM (1.0)

find.top.GO.terms

Find top enriched GO terms

bs.trom

Between-species transcriptome mapping

heatmap.3

Plot TROM scores in a heatmap.

TROM-package

Transcriptome Overlap Measure

ws.trom.orthologs

Within-species transcriptome mapping using ortholog genes

GO_slim_id

GO slim IDs

select.associated.orthologs

Select the associated genes for biological samples of a species among the genes with orthologs in the other species

find.top.GO.slim.terms

Find top enriched GO slim terms

ws.trom

Within-species transcriptome mapping

select.associated.genes

Select the associated genes for biological samples of a species