TSCAN (version 1.10.2)

plotmclust: plotmclust

Description

Plot the model-based clustering results

Usage

plotmclust(mclustobj, x = 1, y = 2, MSTorder = NULL, show_tree = T, show_cell_names = T, cell_name_size = 3, markerexpr = NULL)

Arguments

mclustobj

The exact output of exprmclust function.

x

The column of data after dimension reduction to be plotted on the horizontal axis.

y

The column of data after dimension reduction to be plotted on the vertical axis.

MSTorder

The arbitrary order of cluster to be shown on the plot.

show_tree

Whether to show the links between cells connected in the minimum spanning tree.

show_cell_names

Whether to draw the name of each cell in the plot.

cell_name_size

The size of cell name labels if show_cell_names is TRUE.

markerexpr

The gene expression used to define the size of nodes.

Value

A ggplot2 object.

Details

This function will plot the gene expression data after dimension reduction and show the clustering results.

Examples

data(lpsdata)
procdata <- preprocess(lpsdata)
lpsmclust <- exprmclust(procdata)
plotmclust(lpsmclust)