Table1Heatmap (version 1.2)

plotTable1Heatmap: plotTable1Heatmap

Description

Plot a heatmap of table 1, either by plotting p values, n of patients colored by p-values or n of patients colored by percentage of total patients

Usage

plotTable1Heatmap(factorList, method = c("AssociationByP", "CrosstableByP",
  "CrosstableByN")[1], drawRaster = NULL, ...)

Arguments

factorList

named list with clinical variables coded as factors

method

'AssociationByP' : draw a heatmap with p-values of the association between parameters and a direction of effect if a Fisher Exact test was performed. 'CrosstableByP' : draw a heatmap with p-values of the association between parameters and show the crosstables 'CrosstableByN' : draw a heatmap with percentage of patients in the cell of a crosstable and show the crosstables

drawRaster

draw horizontal and vertical lines marking characteristics

...

plotting parameters for image

Examples

# NOT RUN {
lst <- list(a=sample(c(TRUE,FALSE), 10, replace=TRUE), b=sample(c(TRUE,FALSE), 10, replace=TRUE),
c=sample(c(TRUE,FALSE), 10, replace=TRUE))
lst <- lapply(lst, as.factor)

dev.new(height=10, width=10)

plotTable1Heatmap(factorList=lst, method='AssociationByP', drawRaster=TRUE)

plotTable1Heatmap(factorList=lst, method='CrosstableByP', drawRaster=TRUE)

plotTable1Heatmap(factorList=lst, method='CrosstableByN', drawRaster=TRUE)
# }