Print a TargetExperiment object.
Build excel report of the Target Experiment.
Getters for TargetExperiment object.
Function to obtain the pileup counts for a bam file.
Function to build a feature panel based on specific genomic regions.
TargetExperiment summary.
Plot TargetExperiment object overview.
Show method for the TargetExperiment class.
A pileup matrix example for use the TarSeqQC R package.
Setters for the TargetExperiment slots
Plot attribute exploration of a TargetExperiment object.
Plot feature performance of a TargetExperiment object.
Plot read profiles for a particular genomic region.
TargetExperiment constructor
Graphical exploration of a specific metadata column.
TargetExperiment S4 class implementation in R
Plot nucleotide read percentages for a particular feature.
Plot attribute density and boxplot for each bias source quartile.
Plot read profiles for a particular feature.
An amplicon panel example for use the TarSeqQC R package.
Function to explore read percentages in targeted regions and out
targeted regions.
TarSeqQC: Targeted Sequencing Experiment Quality Control R package
Function to explore read frequencies in targeted regions and out
targeted regions.
Plot the attribute value for all the features of a selected gene.
Function to summarize a featurePanel slot at a gene level.
TargetExperiment object constructor.
Plot feature performance of a TargetExperiment object.