TestGenerator (version 0.3.1)

readPatients.xl: Converts a sample of patients in XLSX format into Unit Testing Definition JSON file.

Description

Converts a sample of patients in XLSX format into Unit Testing Definition JSON file.

Usage

readPatients.xl(
  filePath = NULL,
  testName = "test",
  outputPath = NULL,
  cdmVersion = "5.3"
)

Value

A directory with the test JSON files with sample patients inside the project directory.

Arguments

filePath

Path to the test patient data in Excel format. The Excel has sheets that represent tables from the OMOP-CDM, e.g. person, drug_exposure, condition_ocurrence, etc.

testName

A name of the test population in character.

outputPath

Path to write the test JSON files. If NULL, the files will be written at the project's testthat folder, i.e. tests/testthat/testCases.

cdmVersion

cdm version, default "5.3".

Examples

filePath <- system.file("extdata", "testPatientsRSV.xlsx", package = "TestGenerator")
readPatients.xl(filePath = filePath, outputPath = tempdir())