plot.simutraj

Plot an object of class <code>simutraj</code>.

Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) <doi:10.1111/2041-210X.14038>.

Gonche Danesh

TiPS

Trajectories and Phylogenies Simulator

Emma Saulnier

Olivier Gascuel

Marc Choisy

Samuel Alizon

plot.simutraj function

<dl><dt>x</dt>
<dd>An object of <code>simutraj</code> resulting from running a simulator of trajectories built using the <code>build_simulator</code> function.</dd>
<dt>...</dt>
<dd>Arguments to be passed to methods, such as graphical parameters</dd></dl>

Arguments

Author

Plot an object of class simutraj. — plot.simutraj

<dl>

<dt>x</dt>
<dd>An object of <code>simutraj</code> resulting from running a simulator of trajectories built using the <code>build_simulator</code> function.</dd>


<dt>...</dt>
<dd>Arguments to be passed to methods, such as graphical parameters</dd>

</dl>

plot.simutraj: Plot an object of class `simutraj`.

Description

Usage

Arguments

Author