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TipDatingBeast (version 1.0-8)

Using Tip Dates with Phylogenetic Trees in BEAST (Software for Phylogenetic Analysis)

Description

Assist performing tip-dating of phylogenetic trees with BEAST.

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Version

Install

install.packages('TipDatingBeast')

Monthly Downloads

163

Version

1.0-8

License

GPL (>= 2)

Maintainer

Camilo Khatchikian

Last Published

March 29th, 2018

Functions in TipDatingBeast (1.0-8)

RandomDates

randomize dates among tips in the BEAST input file
ListTaxa

List taxa names present in the BEAST input file
TaxaOut

generates input files for leave-one-out analyses in BEAST
TaxonOut

single Taxon out input file for leave-one-out analysis in BEAST
PlotLOOCV

List taxa names present in the BEAST input file
Flu_BEAST_18

Example BEAST 1 input file
RandomCluster

randomize dates among tips in the BEAST input file
TipDatingBeast-package

Tip dating of phylogenetic trees with BEAST
Flu_BEAST_18.clusters.Flu.csv

Cluster structure example input file for the RandomCluster function
PlotDRT

List taxa names present in the BEAST input file
Flu_BEAST_232

Example BEAST 2 input file
Flu_BEAST_232.clusters.Flu.csv

Cluster structure example input file for the RandomCluster function