subsetByRegion

data

region

<p>An non-negative numeric specifying the additional margin
extracted around the domain.
If <code>margin &lt; 1</code>, then the size of the margin is relative
to the size of the domain.</p>

margin

<p>Subset a TopDomData Object by Region</p>

The 'TopDom' method identifies topological domains in genomes from Hi-C sequence data (Shin et al., 2016 <doi:10.1093/nar/gkv1505>).  The authors published an implementation of their method as an R script (two different versions; also available in this package).  This package originates from those original 'TopDom' R scripts and provides help pages adopted from the original 'TopDom' PDF documentation.  It also provides a small number of bug fixes to the original code.

Henrik Bengtsson

TopDom

An Efficient and Deterministic Method for Identifying
Topological Domains in Genomes

Hanjun Shin

Harris Lazaris

Gangqing Hu

Xianghong Zhou

subsetByRegion function

Subset a TopDomData Object by Region — subsetByRegion

Subset a TopDomData Object by Region

subsetByRegion: Subset a TopDomData Object by Region

Description

Usage

Arguments

Value