countsPerRegion

Calculates Counts per Region in a TopDomData Object

The 'TopDom' method identifies topological domains in genomes from Hi-C sequence data (Shin et al., 2016 <doi:10.1093/nar/gkv1505>). The authors published an implementation of their method as an R script (two different versions; also available in this package). This package originates from those original 'TopDom' R scripts and provides help pages adopted from the original 'TopDom' PDF documentation. It also provides a small number of bug fixes to the original code.

Henrik Bengtsson

TopDom

An Efficient and Deterministic Method for Identifying
Topological Domains in Genomes

Hanjun Shin

Harris Lazaris

Gangqing Hu

Xianghong Zhou

countsPerRegion function

<dl><dt>data</dt>
<dd>A TopDomData object.</dd>
<dt>regions</dt>
<dd>TopDom regions (a data.frame), e.g. domains.</dd></dl>

Arguments

Author

Calculates Counts per Region in a TopDomData Object — countsPerRegion

<dl>

<dt>data</dt>
<dd>A TopDomData object.</dd>


<dt>regions</dt>
<dd>TopDom regions (a data.frame), e.g. domains.</dd>

</dl>

countsPerRegion: Calculates Counts per Region in a TopDomData Object

Description

Usage

Value

Arguments

Author