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TopKLists

Inference, Aggregation and Visualization for Top-K Ranked Lists

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Version

Install

install.packages('TopKLists')

Monthly Downloads

271

Version

1.0.8

License

LGPL-3

Maintainer

Bastian Pfeifer

Last Published

September 1st, 2022

Functions in TopKLists (1.0.8)

breast

Sample data from breast cancer expression
calculate.maxK

The main function for TopKInference
Kendall2Lists

Calculate modified Kendall's tau distance
compute.stream

Calculates point of degeneration j0 into noise of the Idata, applying moderate deviation-based inference
l2norm

Calculate the L2 norm
KendallMLists

KendallMLists
geo.mean

Calculate the geometric mean
deltaplot

An exploratory plot of discordance for delta selection.
Kendall.plot

Plot of the Kendall Criterion values
MC.ranks

MC based rank aggregation
init.p

Initialization method for probabilities
MC.plot

Plot of the ordered stationary probabilities
j0.multi

Function returning an overall point j0 of degeneration into noise for multiple ranked lists
prepare.idata

Prepare Idata vector of 0's and 1's
trans.matrix

Compute transition matrices
Spearman

Modified Spearman's footrule distance
Borda

Borda based rank aggregation
Borda.plot

Plot Borda's scores against ranks
aggmap

Aggregation map for the integration of truncated lists
TopKSample

Sampler to generate N top-k lists according to p
TopKSpaceSampleInput

Sample input for TopKSpace functions
TopKListsGUI

TopKListsGUI for inference and visualization
TopKLists-package

Inference, aggregation and visualization for top-k ranked lists
CEMC

CEMC based rank aggregation
MC

Markov chain based rank aggregation