TraMineR v2.2-0.1

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Trajectory Miner: a Toolbox for Exploring and Rendering Sequences

Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.

Functions in TraMineR

Name Description
alphabet Get or set the alphabet of a state or event sequence object
TraMineR.check.depr.args Checking and managing deprecated arguments
disstreeleaf Terminal node membership
dissmfacw Multi-factor ANOVA from a dissimilarity matrix
disscenter Compute distances to the center of a group
disstree Dissimilarity Tree
ex2 Example data sets with weighted and unweighted sequence data
plot.stslist.freq Plot method for sequence frequency tables
ex1 Example data set with missing values and weights
TraMineR-package Trajectory Miner: a Toolbox for Exploring and Rendering Sequences
dissrep Extracting sets of representative objects using a dissimilarity matrix
bfspell Example data set: First 20 biofam sequences in SPELL form
dissassoc Analysis of discrepancy from dissimilarity measures
plot.stslist.meant Plot method for objects produced by the seqmeant function
plot.stslist Plot method for state sequence objects
dissvar Dissimilarity based discrepancy
mvad Example data set: Transition from school to work
plot.seqdiff Plotting a seqdiff object.
seqcomp Compare two state sequences
plot.stslist.rep Plot method for representative sequence sets
seqdim Dimension of a set of sequences
is.stslist Test if is a proper state sequence (stslist) object
famform Example data set: sequences of family formation
read.tda.mdist Read a distance matrix produced by TDA.
seqconc Concatenate vectors of states or events into a character string
disstree2dot Graphical representation of a dissimilarity tree
seqdss Extract distinct states sequence from a sequence object
seqdistmc Multichannel distances between sequences
seqST Sequences turbulence
seqeapplysub Checking for the presence of given event subsequences
plot.stslist.modst Plot method for modal state sequences
seqecmpgroup Identifying discriminating subsequences
seqdur Extract state durations from a sequence object.
seqcost Generate substitution and indel costs
seqLLCS Compute the length of the longest common subsequence of two sequences
seqLLCP Compute the length of the longest common prefix of two sequences
plot.subseqelist Plot frequencies of subsequences
print.stslist Print method for state sequence objects
plot.stslist.statd Plot method for objects produced by the seqstatd function
seqient Within sequence entropies
seqecontain Check if sequence contains events
seqecreate Create event sequence objects.
plot.subseqelistchisq Plot discriminant subsequences
seqdist Distances (dissimilarities) between sequences
seqeweight Setting or retrieving weights of an event sequence object.
is.eseq Event sequence object
seqalign Computation details about a pairwise alignment
seqlegend Plot a legend for the states in a sequence object
seqdecomp Convert a character string into a vector of states or events
seqeconstraint Setting time constraints and the counting method
seqetm Create a transition-definition matrix
seqivolatility Volatility of individual state sequences
seqlength Sequence length
seqdiff Position-wise discrepancy analysis between groups of sequences
seqefsub Searching for frequent subsequences
seqici Complexity index of individual sequences
seqsep Adds separators to sequences stored as character string
seqfpos Search for the first occurrence of a given element in a sequence
seqindic Sequence indicators
seqdef Create a state sequence object
seqformat Conversion between sequence formats
seqsubsn Number of distinct subsequences in a sequence.
seqgen Random sequences generation
seqfcheck Check if sequences are in the compressed or extended format
seqrecode Recoding state sequence objects and factors
seqfind Indexes of state sequence(s) x in state sequence object y
seqmodst Sequence of modal states
seqistatd State frequencies in each individual sequence
seqeid Retrieve unique ids from an event sequence object.
seqelength Lengths of event sequences
seqnum Transform into a sequence object with numerical alphabet.
seqstatf State frequencies in the whole sequence data set
seqprecarity Precarity index
seqstatd Sequence of transversal state distributions and their entropies
stlab Get or set the state labels of a sequence object
seqrep Extracting sets of representative sequences
seqstatl List of distinct states or events (alphabet) in a sequence data set.
seqmpos Number of matching positions between two sequences.
seqtransn Number of transitions in a sequence
str.eseq String representation of an event sequence object
seqtab Frequency table of the sequences
seqprecstart State precarity
seqtree Tree structured analysis of a state sequence object.
seqpcplot Parallel coordinate plot for sequence data
seqintegration Integrative potential
seqtreedisplay Graphical rendering of a sequence regression tree
seqtrate Compute transition rates between states
seqlogp Logarithm of the probabilities of state sequences
seqplot Plot state sequence objects
seqipos Proportion of positive spells or states per sequence
seqmeant Mean durations in each state
seqpm Find substring patterns in sequences
actcal.tse Example data set: Activity calendar from the Swiss Household Panel (time stamped event format)
TraMineRInternal Access to TraMineR internal functions
cpal Get or set the color palette of a sequence object
TraMineR.checkupdates Check for TraMineR updates
actcal Example data set: Activity calendar from the Swiss Household Panel
biofam Example data set: Family life states from the Swiss Household Panel biographical survey
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Vignettes of TraMineR

Name
TraMineR-state-sequence.Rnw
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Details

Date 2020-04-29
SystemRequirements C++11
License GPL (>= 2)
URL http://traminer.unige.ch
Encoding UTF-8
NeedsCompilation yes
Packaged 2020-04-29 15:28:33 UTC; adm
Repository CRAN
Date/Publication 2020-04-29 16:40:14 UTC

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