extractCTree

<p>Number of the iteration to be extracted</p>

iteration

<p>Return the combined tree corresponding to a given iteration of the TransPhylo results</p>

Inference of transmission tree from a dated phylogeny.
Includes methods to simulate and analyse outbreaks.
The methodology is described in
Didelot et al. (2014) <doi:10.1093/molbev/msu121>,
Didelot et al. (2017) <doi:10.1093/molbev/msw275>.

Xavier Didelot

extractCTree: Return the combined tree corresponding to a given iteration of the TransPhylo results

Description

Usage

Arguments

Value