adjust_color_tone

This function adjusts the saturation and luminance of a given color. It works by converting
the color from RGB to Luv color space, applying the scaling factors to the saturation and luminance,
and then converting it back to RGB.

A tool for comprehensive transcriptomic data analysis, with a focus on transcript-level data preprocessing, expression profiling, differential expression analysis, and functional enrichment. It enables researchers to identify key biological processes, disease biomarkers, and gene regulatory mechanisms. 'TransProR' is aimed at researchers and bioinformaticians working with RNA-Seq data, providing an intuitive framework for in-depth analysis and visualization of transcriptomic datasets. The package includes comprehensive documentation and usage examples to guide users through the entire analysis pipeline. The differential expression analysis methods incorporated in the package include 'limma' (Ritchie et al., 2015, <doi:10.1093/nar/gkv007>; Smyth, 2005, <doi:10.1007/0-387-29362-0_23>), 'edgeR' (Robinson et al., 2010, <doi:10.1093/bioinformatics/btp616>), 'DESeq2' (Love et al., 2014, <doi:10.1186/s13059-014-0550-8>), and Wilcoxon tests (Li et al., 2022, <doi:10.1186/s13059-022-02648-4>), providing flexible and robust approaches to RNA-Seq data analysis. For more information, refer to the package vignettes and related publications.

Dongyue Yu

TransProR

Analysis and Visualization of Multi-Omics Data

adjust_color_tone function

<dl><dt>color</dt>
<dd>A color in hexadecimal format (e.g., "#FF0000") or a valid R color name.</dd>
<dt>saturation_scale</dt>
<dd>Numeric, the scaling factor for saturation (values &lt; 1 decrease saturation, values &gt; 1 increase saturation).</dd>
<dt>luminance_scale</dt>
<dd>Numeric, the scaling factor for luminance (values &lt; 1 darken the color, values &gt; 1 lighten the color).</dd></dl>

Arguments

Adjust Color Tone by Modifying Saturation and Luminance — adjust_color_tone

<dl>

<dt>color</dt>
<dd>A color in hexadecimal format (e.g., "#FF0000") or a valid R color name.</dd>


<dt>saturation_scale</dt>
<dd>Numeric, the scaling factor for saturation (values &lt; 1 decrease saturation, values &gt; 1 increase saturation).</dd>


<dt>luminance_scale</dt>
<dd>Numeric, the scaling factor for luminance (values &lt; 1 darken the color, values &gt; 1 lighten the color).</dd>

</dl>

adjust_color_tone: Adjust Color Tone by Modifying Saturation and Luminance

Description

Usage

Value

Arguments

Examples