histogram-methods: Histogram of the read distribution
Description
Retrieves the histogram computed by the parseReads function
Usage
"histogram"(dc)
Arguments
dc
An object of class DensityContainer.
Value
Returns a numeric vector with the histogram in 1Bp resolution starting from 0.
Details
The histogram is computed by taking the running average within a window of window size as specified by the argument hwindow to the function parseReads().
The histogram is only counting local reads within the read density maps and outside of gaps or outside of possible range filters that might be in place.