Plot Convergence for Hierarchical MPT Models
# S3 method for betaMPT
plot(x, parameter = "mean", type = "default", ...)# S3 method for simpleMPT
plot(x, type = "default", ...)
# S3 method for traitMPT
plot(x, parameter = "mean", type = "default", ...)
fitted hierarchical MPT model (traitMPT, betaMPT)
which parameter to plot (e.g., "theta",
"mean", "rho", "slope").
Parameters are matched partially, in order to plot all entries of vector
valued parameters (see getParam to get a list of parameters).
Moreover, parameter labels can be used, e.g., "theta[D]" or "rho[D,g]"
type of convergence plot. Can be one of "default"
(trace+density), "acf" (auto-correlation function),
"trace", "autocorr", "crosscorr","density",
"gelman". See plotting functions in the coda package
(plot.mcmc.list,
acfplot,
traceplot,
autocorr.plot,
crosscorr.plot,
densplot,
gelman.plot
).
further arguments passed to the plotting functions in coda
plot(betaMPT): Plot convergence for beta MPT
plot(simpleMPT): Plot convergence for nonhierarchical MPT model
plot(traitMPT): Plot convergence for latent-trait MPT