ReadTntTree

<p>character string specifying path to TNT `.tre file</p>

filename

<p>Reads a tree from TNT's paranthetical output.</p>

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau Guillerme and Smith (2017) <doi:10.1101/209775>.

Martin R Smith

TreeSearch

ReadTntTree: Parse TNT Tree

Description

Usage

Arguments

Value