DoubleNNI

parent

child

edgeToBreak

<p>Returns the edge parameter of the two trees consistent with the speficied <acronym>NNI</acronym> rearrangement</p>

internal

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

DoubleNNI function

Double NNI — DoubleNNI

Double NNI

DoubleNNI: Double NNI

Description

Usage

Arguments

Value