MatrixToPhyDat

<p>matrix of tokens, probably created with [ReadCharacters] 
or [ReadTntCharacters].</p>

tokens

<p>Converts a matrix of tokens to a phyDat object</p>

internal

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

MatrixToPhyDat function

Matrix to phydat — MatrixToPhyDat

Matrix to phydat

MatrixToPhyDat: Matrix to phydat

Description

Usage

Arguments

Value