NeworderPruningwise

<p>neworder_pruningwise
Wrapper for the ape function</p>

internal

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

NeworderPruningwise function

neworder_pruningwise
Wrapper for the ape function — NeworderPruningwise

neworder_pruningwise
Wrapper for the ape function

NeworderPruningwise: neworder_pruningwise Wrapper for the ape function

Description

Usage

Arguments