SingleCharMorphy

State of each character at each tip in turn, in a format that will be converted
to a character string by <code><a rd-options="" href="/link/paste0?package=TreeSearch&version=0.2.2" data-mini-rdoc="TreeSearch::paste0">paste0</a>(char, ';', collapse='')</code>.

char

Morphy object from single character

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

SingleCharMorphy function

State of each character at each tip in turn, in a format that will be converted
to a character string by <code><a rd-options='' href='paste0'>paste0</a>(char, ';', collapse='')</code>.

SingleCharMorphy: Morphy object from single character

Description

Usage

Arguments

Value