SplitsRepeated

<p>Logical matrix describing the bipartition splits
defined by a tree (see [Quartet:Tree2Splits] for format).  The first row
of `original` must be `FALSE` for all splits.</p>

original, matches

<p>Determines whether any of the splits described in `original` are present in
`matches`.</p>

internal

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

SplitsRepeated function

Are Splits Repeated? — SplitsRepeated

Are Splits Repeated?

SplitsRepeated: Are Splits Repeated?

Description

Usage

Arguments

Value