mpl_apply_tipdata

morphyobj

<p>Once the caller is satisfied with the setup of types, weights,
and partitioning, this function must be called, thereby committing the
parameters until any changes are made. If no character types have been
assigned, the function will fail with an error code.</p>

internal

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

mpl_apply_tipdata function

Commits parameters prior to nodal set calculations. — mpl_apply_tipdata

Commits parameters prior to nodal set calculations.

mpl_apply_tipdata: Commits parameters prior to nodal set calculations.

Description

Usage

Arguments

Value