mpl_attach_rawdata

morphyobj

<p>C-style string corresponding to the tip data for each taxon in turn.</p>

rawmatrix

<p>Attaches a raw data character state matrix in the form of a C-style
(i.e. NULL-terminated) string. This can be the matrix block extracted from a
Nexus file or an xread table format. The matrix should contain no terminal or
tip labels.</p>

internal

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

mpl_attach_rawdata function

Attach raw character state data (i.e. tip data). — mpl_attach_rawdata

Attach raw character state data (i.e. tip data).

mpl_attach_rawdata: Attach raw character state data (i.e. tip data).

Description

Usage

Arguments

Value