AncestorEdge

edge

the first column of the edge matrix of a tree of class
<code><a rd-options="" href="/link/phylo?package=TreeSearch&version=0.3.2" data-mini-rdoc="TreeSearch::phylo">phylo</a></code>, i.e. <code>tree$edge[, 1]</code>

parent

the second column of the edge matrix of a tree of class
<code><a rd-options="" href="/link/phylo?package=TreeSearch&version=0.3.2" data-mini-rdoc="TreeSearch::phylo">phylo</a></code>, i.e. <code>tree$edge[, 2]</code>

child

internal

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

AncestorEdge function

the first column of the edge matrix of a tree of class
<code><a rd-options='' href='phylo'>phylo</a></code>, i.e. <code>tree$edge[, 1]</code>

the second column of the edge matrix of a tree of class
<code><a rd-options='' href='phylo'>phylo</a></code>, i.e. <code>tree$edge[, 2]</code>

AncestorEdge: Ancestral edge

Description

Usage

Arguments

Value