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TreeSearch (version 0.3.2)

ConsensusWithout: Consensus without taxa

Description

Displays a consensus plot with selected taxa excluded.

Usage

ConsensusWithout(trees, tip, ...)

MarkMissing(tip, position = "bottomleft", ...)

Arguments

trees

A list of phylogenetic trees, of class multiPhylo or list

tip

A character vector specifying the names (or numbers) of tips to drop (using ape::drop.tip)

Additional parameters to pass on to ape::consensus or legend

position

Where to plot the missing taxa. See legend for options.

Value

A consensus tree without the excluded taxa

Functions

  • MarkMissing: Adds missing taxa to a plotted consensus tree

Details

A useful way to gain resolution if a few wildcard taxa obscure a consistent set of relationship.