InfoAmounts

A matrix, where each row corresponds to a character, each column to
a tip, and each entry to the value (1 or 2) of the character at that tip.

tokenTable

number of random trees to generate when calculating Profile curves

precision

Boolean (<code>TRUE</code>/<code>FALSE</code>): display warnings when concavity
functions are generated by approximation.

warn

As presently implemented, this function requires that there be no ambiguous tokens
and two applicable tokens, '1' and '2'.

Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.

InfoAmounts: Amount of information in each character

Description

Usage

Arguments

Value