Suboptimality

<p>list of trees, to include an optimal tree</p>

trees

<p>logical stating whether to normalise results to lowest score</p>

proprtional

internal

Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.

Suboptimality: Tree suboptimality

Description

Usage

Arguments

Value