mpl_set_num_internal_nodes

This specifies the number of internal nodes over which
reconstruction sets need to be made. It is up to the caller to ensure the
correct number of nodes and the relationships between them.

internal

Reconstruct phylogenetic trees from discrete data.
Inapplicable character states are handled using the algorithm of Brazeau,
Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083> with the "Morphy"
library, under equal or implied step weights.
Contains a "shiny" user interface for interactive tree search and exploration
of results, including character visualization, rogue taxon detection,
tree space mapping, and cluster consensus trees (Smith 2022a, b)
<doi:10.1093/sysbio/syab099>, <doi:10.1093/sysbio/syab100>.
Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>,
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>
and custom optimality criteria are implemented.

Martin R. Smith

TreeSearch

Phylogenetic Analysis with Morphological Data

Martin Brazeau

mpl_set_num_internal_nodes function

<dl><dt>morphyobj</dt>
<dd>An instance of the Morphy object.</dd>
<dt>nnodes</dt>
<dd>The desired number of internal nodes.</dd></dl>

Arguments

Author

Sets the number of internal nodes in the dataset — mpl_set_num_internal_nodes

<dl>

<dt>morphyobj</dt>
<dd>An instance of the Morphy object.</dd>


<dt>nnodes</dt>
<dd>The desired number of internal nodes.</dd>

</dl>

mpl_set_num_internal_nodes: Sets the number of internal nodes in the dataset

Description

Usage

Value

Arguments

Author

See Also