- parent
Integer vector corresponding to the first column of the edge
matrix of a tree of class phylo
, i.e. tree$edge[, 1]
.
- child
Integer vector corresponding to the second column of the edge
matrix of a tree of class phylo
, i.e. tree$edge[, 2]
.
- dataset
Third argument to pass to TreeScorer
.
- TreeScorer
function to score a given tree.
The function will be passed three parameters, corresponding to the
parent
and child
entries of a tree's edge list, and a dataset.
- EdgeSwapper
a function that rearranges a parent and child vector,
and returns a list with modified vectors; for example SPRSwap()
.
- scoreToBeat
Double giving score of input tree.
- iter
iteration number of calling function, for reporting to user only.
- hits
Integer giving number of times the input tree has already been hit.
- verbosity
Numeric specifying level of detail to display in console:
larger numbers provide more verbose feedback to the user.
- ...
further arguments to pass to TreeScorer()
, e.g. dataset =
.