congreveLamsdellMatrices

<p>Contains the 100 simulated matrices generated by
Congreve2016TreeSearch using a heterogeneous Markov-k model,
generated from the referenceTree topology, with
all branches sharing an equal length.</p>

datasets

Reconstruct phylogenetic trees from discrete data.
Inapplicable character states are handled using the algorithm of Brazeau,
Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083> with the "Morphy"
library, under equal or implied step weights.
Contains a "shiny" user interface for interactive tree search and exploration
of results, including character visualization, rogue taxon detection,
tree space mapping, and cluster consensus trees (Smith 2022a, b)
<doi:10.1093/sysbio/syab099>, <doi:10.1093/sysbio/syab100>.
Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>,
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>
and custom optimality criteria are implemented.

Martin R. Smith

TreeSearch

Phylogenetic Analysis with Discrete Character Data

Martin Brazeau

congreveLamsdellMatrices function

<p>A list with 100 entries, each comprising a <code>phyDat</code> object of 55
characters for 22 taxa</p>

congreveLamsdellMatrices: 100 simulated data matrices

Description

Usage

Arguments

Format

References

Examples