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Label nodes with jackknife support values
JackLabels(
tree,
jackTrees,
plot = TRUE,
add = FALSE,
adj = 0,
col = NULL,
frame = "none",
pos = 2L,
...
)A named vector specifying the proportion of jackknife trees
consistent with each node in tree, as plotted.
If plot = FALSE, blank entries are included corresponding to nodes
that do not require labelling; the return value is in the value required
by phylo$node.label.
A tree of class phylo.
A list or multiPhylo object containing trees generated
by Jackknife().
Logical specifying whether to plot results; if FALSE,
returns blank labels for nodes near the root that do not correspond to a
unique split.
Logical specifying whether to add the labels to an existing plot.
Parameters to pass to nodelabels().
Jackknife(): Generate trees by jackknife resampling
Other split support functions:
Jackknife(),
MaximizeParsimony(),
SiteConcordance
library("TreeTools", quietly = TRUE) # for as.phylo
# jackTrees will usually be generated with Jackknife(), but for simplicity:
jackTrees <- as.phylo(1:100, 8)
tree <- as.phylo(0, 8)
JackLabels(tree, jackTrees)
tree$node.label <- JackLabels(tree, jackTrees, plot = FALSE)
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