RootTree

A tree of class <code><a rd-options="" href="/link/phylo?package=TreeTools&version=0.1.2" data-mini-rdoc="TreeTools::phylo">phylo</a></code>.

tree

Character vector specifying the names of the tips to
include in the outgroup.

outgroupTips

Roots a tree on the smallest clade containing the specified tips.

Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include: generation of trees with specified shapes;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and
analysis of partitions and partition information.

Martin R. Smith

TreeTools

Create, Modify and Analyse Phylogenetic Trees

Emmanuel Paradis

Klaus Schliep

RootTree function

A tree of class <code><a rd-options='' href='phylo'>phylo</a></code>.

RootTree: Root a phylogenetic tree

Description

Usage

Arguments

Value

See Also