Lobo.data

Raw data from Zhang et al. 2016
Modified so that absences are treated appropriately:<dl class="dl-horizontal">
<dt>Character 7 </dt><dd>inapplicable to absent where cephalic shield (char 3)
is absent</dd>
<dt>Character 40</dt><dd>inapplicable to absent where paired appendages absent</dd>
<dt>Character 46</dt><dd>inapplicable to absent</dd>
<dt>Character 64</dt><dd>76: stet; trunk annulations / limbs may primitively
have been papillate or non-papillate</dd>
<dt>Character 69</dt><dd>a good case that the fusion of flaps with endopods is
secondary; thus inapplicable to absent where 67 is
applicable</dd>
<dt>Character 72</dt><dd>inapplicable to absent where appendages are present</dd>
<dt>Character 77</dt><dd>inapplicable to absent where papillae applicable, as
spine is a secondary elaboration of papillae</dd>
<dt>Character 78</dt><dd>inapplicable to absent</dd>
<dt>Character 79</dt><dd>stet, as possible that limbs evolved by extension of
plate-like exoskeletal element</dd>
<dt>Character 80</dt><dd>inapplicable to absent, on assumption that ancestral
claws were simple</dd>
<dt>Characters 83, 84, 86, 87, 92</dt><dd>inapplicable to absent; an obvious
elaboration</dd>
<dt>Character 93</dt><dd>inapplicable to absent; ancestrally undifferentiated
by definition?</dd>
<dt>Character 96</dt><dd>inapplicable to absent; ancestrally undifferentiated
by definition. Ambiguous in taxa that lack claws as
rotation would not be observed. ]</dd>
</dl>

datasets

Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include: generation of trees with specified shapes;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and
analysis of partitions and partition information.

Martin R. Smith

TreeTools

Create, Modify and Analyse Phylogenetic Trees

Emmanuel Paradis

Klaus Schliep

Lobo.data function

An object of class <code>list</code> of length 48.

Format

Raw data from Zhang et al. 2016
Modified so that absences are treated appropriately:<dl class='dl-horizontal'>
<dt>Character 7 </dt><dd>inapplicable to absent where cephalic shield (char 3)
is absent</dd>
<dt>Character 40</dt><dd>inapplicable to absent where paired appendages absent</dd>
<dt>Character 46</dt><dd>inapplicable to absent</dd>
<dt>Character 64</dt><dd>76: stet; trunk annulations / limbs may primitively
have been papillate or non-papillate</dd>
<dt>Character 69</dt><dd>a good case that the fusion of flaps with endopods is
secondary; thus inapplicable to absent where 67 is
applicable</dd>
<dt>Character 72</dt><dd>inapplicable to absent where appendages are present</dd>
<dt>Character 77</dt><dd>inapplicable to absent where papillae applicable, as
spine is a secondary elaboration of papillae</dd>
<dt>Character 78</dt><dd>inapplicable to absent</dd>
<dt>Character 79</dt><dd>stet, as possible that limbs evolved by extension of
plate-like exoskeletal element</dd>
<dt>Character 80</dt><dd>inapplicable to absent, on assumption that ancestral
claws were simple</dd>
<dt>Characters 83, 84, 86, 87, 92</dt><dd>inapplicable to absent; an obvious
elaboration</dd>
<dt>Character 93</dt><dd>inapplicable to absent; ancestrally undifferentiated
by definition?</dd>
<dt>Character 96</dt><dd>inapplicable to absent; ancestrally undifferentiated
by definition. Ambiguous in taxa that lack claws as
rotation would not be observed. ]</dd>
</dl>

Lobo.data: Raw data from Zhang et al. 2016

Description

Usage

Arguments

Format