TreeTools (version 1.10.0)

PairwiseDistances: Distances between each pair of trees

Description

Distances between each pair of trees

Usage

PairwiseDistances(trees, Func, valueLength = 1L, ...)

Value

Matrix detailing distance between each pair of trees. Identical trees are assumed to have zero distance.

Arguments

trees

List of trees of class phylo.

Func

Function returning a distance between two trees.

valueLength

Integer specifying expected length of the value returned by Func.

...

Additional arguments to Func.

Author

Martin R. Smith ()

Examples

trees <- list(BalancedTree(8), PectinateTree(8), StarTree(8))
TCIDiff <- function(tree1, tree2) {
  TotalCopheneticIndex(tree1) - TotalCopheneticIndex(tree2)
}
PairwiseDistances(trees, TCIDiff, 1)
TCIRange <- function(tree1, tree2) {
  range(TotalCopheneticIndex(tree1), TotalCopheneticIndex(tree2))
}
PairwiseDistances(trees, TCIRange, 2)