TreeTools (version 1.9.0)
Create, Modify and Analyse Phylogenetic Trees
Description
Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)
;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2022) ,
and of tree balance (Mir et al. 2013) ;
artificial extinction (Asher & Smith, 2022) ;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
,
and TNT formats;
and analysis of splits and cladistic information.