rcmb.rate

This dataset is an example dataset of recombination rates between SNPs
The variables are as follows:

datasets

Simulate genotypes for case-parent triads, case-control, and quantitative trait samples with realistic linkage diequilibrium structure and allele frequency distribution. For studies of epistasis one can simulate models that involve specific SNPs at specific sets of loci, which we will refer to as "pathways". TriadSim generates genotype data by resampling triad genotypes from existing data. The details of the method is described in the manuscript under preparation "Simulating Autosomal Genotypes with Realistic Linkage Disequilibrium and a Spiked in Genetic Effect" Shi, M., Umbach, D.M., Wise A.S., Weinberg, C.R.

Min Shi

TriadSim

Simulating Triad Genomewide Genotypes

rcmb.rate function

A data frame with 478 rows and 6 variables<dl class="dl-horizontal">
 <dt>CHR</dt><dd>Chromosome</dd>
 <dt>RS</dt><dd>SNP rs number</dd>
 <dt>POS</dt><dd>Chromosomal position</dd>
 <dt>RATE</dt><dd>recombination rate between the SNP and the SNP above</dd>
</dl>

Format

An example recombination rate dataset — rcmb.rate

A data frame with 478 rows and 6 variables<dl class='dl-horizontal'>
 <dt>CHR</dt><dd>Chromosome</dd>
 <dt>RS</dt><dd>SNP rs number</dd>
 <dt>POS</dt><dd>Chromosomal position</dd>
 <dt>RATE</dt><dd>recombination rate between the SNP and the SNP above</dd>
</dl>

rcmb.rate: An example recombination rate dataset

Description

Usage

Arguments

Format