```
# NOT RUN {
data(alba)
### Response Surface Analysis (varies Linf and K) ###
# 'cross' method (used in FiSAT)
fit1 <- ELEFAN(
x = alba, method = "cross",
Linf_range = seq(from = 10, to = 20, length.out = 10),
K_range = exp(seq(from = log(0.1), to = log(2), length.out = 20)),
cross.date = alba$dates[3], cross.midLength = alba$midLengths[4],
contour = TRUE
)
fit1$Rn_max; unlist(fit1$par)
plot(fit1); points(alba$dates[3], alba$midLengths[4], col=2, cex=2, lwd=2)
# 'cross' method (bin with maximum score crossed)
fit2 <- ELEFAN(
x = alba, method = "cross",
Linf_range = seq(from = 10, to = 20, length.out = 20),
K_range = exp(seq(from = log(0.1), to = log(2), length.out = 20)),
cross.max = TRUE,
contour = TRUE
)
fit2$Rn_max; unlist(fit2$par)
plot(fit2); points(alba$dates[7], alba$midLengths[9], col=2, cex=2, lwd=2)
# 'optimise' method (default)
fit3 <- ELEFAN(
x = alba, method = "optimise",
Linf_range = seq(from = 10, to = 20, length.out = 10),
K_range = exp(seq(from = log(0.1), to = log(2), length.out = 20)),
contour = TRUE
)
fit3$Rn_max; unlist(fit3$par)
plot(fit3)
### K-Scan (varies K, Linf is fixed) ###
# 'cross' method
fit4 <- ELEFAN(
x = alba, method = "cross",
Linf_fix = 10,
K_range = round(exp(seq(from = log(0.1), to = log(2), length.out = 50)),2),
cross.date = alba$dates[3], cross.midLength = alba$midLengths[4]
)
fit4$Rn_max; unlist(fit4$par)
plot(fit4); points(alba$dates[3], alba$midLengths[4], col=2, cex=2, lwd=2)
# }
# NOT RUN {
# }
```

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